NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LP_F_10_SI03_120DRAFT_1000797

Scaffold LP_F_10_SI03_120DRAFT_1000797


Overview

Basic Information
Taxon OID3300000256 Open in IMG/M
Scaffold IDLP_F_10_SI03_120DRAFT_1000797 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14571
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, North Pacific Ocean
CoordinatesLat. (o)48.35Long. (o)-123.3Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F047713Metagenome149N
F092887Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
LP_F_10_SI03_120DRAFT_100079712F092887AGGGGGVVISKPIRRNKNTPKNVVLIEPPRKVSTHDRIINVLKEYKKGLPLTELYYKTKVLSMGNLHHTIKFMVRAGEVKQESCPHCSVTTLYKLTI*
LP_F_10_SI03_120DRAFT_100079718F047713AGGAGMEIIGQGEVAALEIIKEMFGNSSEYMTQVKLSDMVSPEYLETFSDRQLKETIDIVVVTVFECLAIRVQDKHHTSPRMAMIDNIQKLMLEWNGWKVIDIWHYECKELWKDKVNKKSRLELELALKESSID*
LP_F_10_SI03_120DRAFT_10007975F007003N/AMINFFTENIDEKKYRDIIQRIIMINGHDGTNNSGYKAWQNFEENWELNIIPVTEQEDFKVYYEHLNVETSDGIAWGVTGSKVIYMFINDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRIYDSPEGRANTRGAAATVIVHDNWYGNKKTIKIWIRWSMIWLPITIPFIPVKEAKKIYAI*
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