NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LP_J_09_P20_1000DRAFT_1008014

Scaffold LP_J_09_P20_1000DRAFT_1008014


Overview

Basic Information
Taxon OID3300000258 Open in IMG/M
Scaffold IDLP_J_09_P20_1000DRAFT_1008014 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_09_P20_1000
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameLine P, North Pacific Ocean
CoordinatesLat. (o)48.35Long. (o)-123.3Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030563Metagenome185Y
F038414Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
LP_J_09_P20_1000DRAFT_10080141F030563N/AYPTTRICSGCLNVFNRAECDIDISDFWNLSEELAWACSTKCTNDAKDNWLKPKNKMQNNAELS*
LP_J_09_P20_1000DRAFT_10080144F038414N/AMSNIMTEEQRDNTINEFYKKRTSPKTIQIQDSKTTRSKAEWLHISTSEEDGEGQGTYDVGRRVMKRERLADKKLRAKQAKAA*

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