NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold LP_J_08_P26_500DRAFT_1017208

Scaffold LP_J_08_P26_500DRAFT_1017208


Overview

Basic Information
Taxon OID3300000259 Open in IMG/M
Scaffold IDLP_J_08_P26_500DRAFT_1017208 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_J_08_P26_500
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP26, Pacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006919Metagenome362Y
F032311Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
LP_J_08_P26_500DRAFT_10172082F006919GAGMKSFKQHLNEFAIQSTSDIVFEVGSQGQGSSGMNIPISGPMFKRIWPDTIRAIVFHATDAEHLAGLKRLEGGKKSISAFFSMMANQMEGGIATDGGIVIEMEADILVSAKDDIMSRVDKGGRRWVEMSWFENAQGWGNPAGFDKVERGLNNLIRELVLKYLEPIMGNKARTEPEFYLWADMKRHLKDSKKLSLVIKDYFDGVEKVIKANKEVMSSIFYGYARSKRQTDNAWDEQIVNNIKIKKVHVLLDVVDDGDKEEIELSKLPVQEWDYASELEIYTRDVVARNRPLQIKGK*
LP_J_08_P26_500DRAFT_10172083F032311N/AFKFPSPNSDMMIHVYLRKMTPPSKKGTMAFNYQLEDK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.