Scaffold LP_A_09_P04_10DRAFT_1024146

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold LP_A_09_P04_10DRAFT_1024146

Scaffold LP_A_09_P04_10DRAFT_1024146

Overview

Basic Information
Taxon OID	3300000265 Open in IMG/M
Scaffold ID	LP_A_09_P04_10DRAFT_1024146 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1080
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Line P, Station P4
Coordinates	Lat. (^o)	48.65	Long. (^o)	-126.666667	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045049	Metagenome / Metatranscriptome	153	N
F089432	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
LP_A_09_P04_10DRAFT_10241461	F089432	GAG	MSIESKEWLDRNEWPDIPIDSSAYSHYTYLSELLEQFGKEYHEKQLVKYASVQKTKFKKYL*
LP_A_09_P04_10DRAFT_10241462	F045049	N/A	MIKKLKIFWDKFTTRFAVPLLIVSMVWNTYLGWESRTNARASEYRLKSYILEHRHLPIEENIYTITSVDGEEIEIDESTYGEVDWRWLKENGWEDMIPSPMDNLTPEGISDIYLGKIFNGISNIKSKIVNWYESLFKEEYIKTMRG*

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