Scaffold EM268_1005172

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold EM268_1005172

Scaffold EM268_1005172

Overview

Basic Information
Taxon OID	3300000286 Open in IMG/M
Scaffold ID	EM268_1005172 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Cork, Ireland - EM268
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Macrogen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3620
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location
Location Name	Cork, Ireland
Coordinates	Lat. (^o)	51.907	Long. (^o)	-8.472	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087336	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
EM268_10051723	F087336	N/A	MHCLLRGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIRLAEQRQVAFLEIAFQILPLKSKQKKSPPRGKLSKCSFRK*

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