Scaffold EM283_1043863

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold EM283_1043863

Scaffold EM283_1043863

Overview

Basic Information
Taxon OID	3300000289 Open in IMG/M
Scaffold ID	EM283_1043863 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Cork, Ireland - EM283
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Macrogen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3717
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location
Location Name	Cork, Ireland
Coordinates	Lat. (^o)	51.907	Long. (^o)	-8.472	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068941	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
EM283_10438634	F068941	GAGG	MKNNKGLIIGMIGLIILMIGGTYAYYKWNSTSNINISVGIEGSTVTFNGGSNVTGILIPTSSKEEGIKKDITVIASEAGSTMSLYMDLTTMPSELKEESFVYELYYNDTTLVTKGNFKDITYASSGVTTLTLFTDRVVNTTTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLYATGKNATLNG*

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