Scaffold bgg_mtDRAFT_1045815

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold bgg_mtDRAFT_1045815

Scaffold bgg_mtDRAFT_1045815

Overview

Basic Information
Taxon OID	3300000305 Open in IMG/M
Scaffold ID	bgg_mtDRAFT_1045815 Open in IMG/M
Source Dataset Name	Blue grama grass rhizosphere microbial communities from Sevilleta, New Mexico, USA - Combined Assembly
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Blue Grama Grass Rhizosphere Eukaryotic And Microbial Communities From Sevilleta Long Term Ecological Research Site, New Mexico, Us

Source Dataset Sampling Location
Location Name	Sevilleta Long Term Ecological Research site, New Mexico, US
Coordinates	Lat. (^o)	34.3348	Long. (^o)	-106.631	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009290	Metagenome / Metatranscriptome	320	Y

Sequences

Protein ID	Family	RBS	Sequence
bgg_mtDRAFT_10458151	F009290	N/A	GGTRVITTNTEKIGRIAREMAEVQRDSYEALAENFAAAQSRSIGLANDGLKFMRLQEDNARAAQEWFANGVKLLQLQQRNAEFVQGWTGDAVEVVREQSEHNVRTAEAFARSVSKQQEGYRALTQQWVGAYRDFFSPFSYVQKSMRTFQRATQQGLEATQQVTQQGLRVAEE

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