NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WSSedB1CaDRAFT_10039026

Scaffold WSSedB1CaDRAFT_10039026


Overview

Basic Information
Taxon OID3300000313 Open in IMG/M
Scaffold IDWSSedB1CaDRAFT_10039026 Open in IMG/M
Source Dataset NameWetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)917
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Source Dataset Sampling Location
Location NameTwitchell Island in the Sacramento/San Joaquin Delta, CA
CoordinatesLat. (o)38.10726Long. (o)-121.648538Alt. (m)Depth (m)1.6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015004Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
WSSedB1CaDRAFT_100390261F015004GGAGGMGAAKNLALIAAGYALCVVGGFAAVAVNELFMPADAQGSPGMVAFGDMILFMLVAGFLGLVPTWFLLKLLIEKAPRALLTTELLVAAMGPVSWLAMVAMAMTTPAGGPSFTNLPQAGRELFGLFIAFGAIPRIVVGPVLVVIEGVTFFLVRERVVRALLAAAMLMDIIPLGIYALHWARAVHY*
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