NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EchG_transB_7880CDRAFT_1003913

Scaffold EchG_transB_7880CDRAFT_1003913


Overview

Basic Information
Taxon OID3300000340 Open in IMG/M
Scaffold IDEchG_transB_7880CDRAFT_1003913 Open in IMG/M
Source Dataset NameFerrous microbial mat and aquatic microbial communities from Echinus Geyser, Yellowstone National Park, USA - transect B T=78-80 C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2581
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Micrarchaeota → unclassified Candidatus Micrarchaeota → Candidatus Micrarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Ferrous Microbial Mat And Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameEchinus Geyser, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7220558Long. (o)-110.7021057Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042426Metagenome / Metatranscriptome158N
F061049Metagenome / Metatranscriptome132Y
F063847Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
EchG_transB_7880CDRAFT_10039133F063847AGGGGGMKSKKYIFCYDQYSYLQDRIITHHVSIYAKSLKEAESKLEKLGYKGLYLKKKKRRPSY*
EchG_transB_7880CDRAFT_10039134F061049N/AMSIFVIKFEKDNSIIKEWVFEGNEDLEKVLVEMFDIDFQFIKKIRGLEK*
EchG_transB_7880CDRAFT_10039135F042426GGTGGMEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMIYATTLLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPKAPVQVQEEGF*
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