NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BeoS_FeMat_6568CDRAFT_1004035

Scaffold BeoS_FeMat_6568CDRAFT_1004035


Overview

Basic Information
Taxon OID3300000346 Open in IMG/M
Scaffold IDBeoS_FeMat_6568CDRAFT_1004035 Open in IMG/M
Source Dataset NameFerric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2318
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameBeowulf Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.731451Long. (o)-110.7113131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011233Metagenome / Metatranscriptome293N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
BeoS_FeMat_6568CDRAFT_10040351F011233GAGLAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSSEYTILNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEATVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFE
BeoS_FeMat_6568CDRAFT_10040354F067921GGGGGLLETFSRIEDRILRNGQYLLVSFSGSQHPEESSYTGFRVTKHNLTTLYYNFATEVPNFLPMAPFGGQASATTSPPYISNFKFSLQLAQNVTDMFDLSKNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSPSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIMPAFNFVINRMTLEPLSKQDIRKAILAGFPIRTLGAVDSSIPISREKYPGLQTVTYKEVYGGGM*
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