NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BeoS_FeMat_6568CDRAFT_1009344

Scaffold BeoS_FeMat_6568CDRAFT_1009344


Overview

Basic Information
Taxon OID3300000346 Open in IMG/M
Scaffold IDBeoS_FeMat_6568CDRAFT_1009344 Open in IMG/M
Source Dataset NameFerric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)963
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota → Candidatus Marsarchaeota group 2 → Candidatus Marsarchaeota G2 archaeon BE_D(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameBeowulf Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.731451Long. (o)-110.7113131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033507Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
BeoS_FeMat_6568CDRAFT_10093442F033507N/AVVKSNVLDVDVVQSTTSSGTLTVNLSVTCPSSANGCNINQVDGVYYLYGVLDGYYYCGLQMNNQSVRYDWTLNISATPTSLASGATVSIEVTYFDTYPGRPYYTETWGFTLNSNGQALGEFSVCMVPVTIFPESSVGIKVVGVKSATDQSIPYTSSTITIIPE*
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