Scaffold BeoS_FeMat_6568CDRAFT_1010225

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold BeoS_FeMat_6568CDRAFT_1010225

Scaffold BeoS_FeMat_6568CDRAFT_1010225

Overview

Basic Information
Taxon OID	3300000346 Open in IMG/M
Scaffold ID	BeoS_FeMat_6568CDRAFT_1010225 Open in IMG/M
Source Dataset Name	Ferric oxide microbial mat communities from Beowulf Spring, Yellowstone National Park, USA - T=65-68
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	866
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Beowulf Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.731451	Long. (^o)	-110.7113131	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F097669	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
BeoS_FeMat_6568CDRAFT_10102251	F097669	AGG	MSEIPELTSLPKIWVEMQGQAPNYTYKCSACSYINNYKEVVVRHYYGTHISDDIKNKAFNIQKVAIKDYGITVTLYVCSICKWSTDGRNIASVASHFYHSHVNPAVRNVTNPLVKQILERLKGLSEEQLKQVLDYVNAL*

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