NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GreS_7680CDRAFT_1000937

Scaffold GreS_7680CDRAFT_1000937


Overview

Basic Information
Taxon OID3300000348 Open in IMG/M
Scaffold IDGreS_7680CDRAFT_1000937 Open in IMG/M
Source Dataset NameAcidic sulfate chloride spring microbial streamer communities from Grendel Spring, Yellowstone National Park, USA - T=76-80
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4446
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameGrendel Spring, Yellowstone National park. Wyoming, USA
CoordinatesLat. (o)44.7230812Long. (o)-110.7095749Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097670Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
GreS_7680CDRAFT_10009376F097670N/AMTSYKVFDKDIYTETDEIVTINLKTGETNHETKMYFYDGKELKEIKDLQEYNLKLYEISQKIQEEFTKFSTKYAKPPIGYMPISNIIYEFMLNRNNIVLISYANISKVENEISKEITKDSIKIIVKSKTIFNKEWNFESTQNLSPEIKDNIAKIIEKALKSAMTIIKKNT*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.