Scaffold GreS_7680CDRAFT_1004241

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GreS_7680CDRAFT_1004241

Scaffold GreS_7680CDRAFT_1004241

Overview

Basic Information
Taxon OID	3300000348 Open in IMG/M
Scaffold ID	GreS_7680CDRAFT_1004241 Open in IMG/M
Source Dataset Name	Acidic sulfate chloride spring microbial streamer communities from Grendel Spring, Yellowstone National Park, USA - T=76-80
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1606
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Grendel Spring, Yellowstone National park. Wyoming, USA
Coordinates	Lat. (^o)	44.7230812	Long. (^o)	-110.7095749	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101504	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
GreS_7680CDRAFT_10042412	F101504	N/A	LKLNFDKVLTLNTVSQASLKQIATELNNFDGILFVDDIGAINTEYMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPSVFDEIVGNTSFEANIMDKSYRYYNMRIPSNKPFQHPKIKELQHIKDKFENMKVDIDKSRVEALANNFMTFNSVVRRYKIVNNFVKLTAILNNHKTATSEDYQFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYTNIFHYSKLKTYLNVSTKTIYNYAKMNNVKIDNGYIIYDNERILKVLKNVI*

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