NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GreS_7680CDRAFT_1005382

Scaffold GreS_7680CDRAFT_1005382


Overview

Basic Information
Taxon OID3300000348 Open in IMG/M
Scaffold IDGreS_7680CDRAFT_1005382 Open in IMG/M
Source Dataset NameAcidic sulfate chloride spring microbial streamer communities from Grendel Spring, Yellowstone National Park, USA - T=76-80
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameGrendel Spring, Yellowstone National park. Wyoming, USA
CoordinatesLat. (o)44.7230812Long. (o)-110.7095749Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021807Metagenome / Metatranscriptome217N

Sequences

Protein IDFamilyRBSSequence
GreS_7680CDRAFT_10053822F021807AGGVRTKYKVALGLSAVALLVFIGLTVHAVSAFVKNALSIIGGLFGYVIYDVSFIVSADLVYNGITRHFKTAKSKIAFSLGAIALLVLTGFAVHSISVHVTEAAQSVYDVFTVSFALLISVILLDMVITEMKDMEYRAAMVMASLGIALLLLNTGLLGHIAWALGKGLGVGFDFKALLASSIISAFDAYGLEAFYFGGFIYPIGNASIRRGHRQVRSEGD*
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