Scaffold ICChiseqgaiiFebDRAFT_10988777

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ICChiseqgaiiFebDRAFT_10988777

Scaffold ICChiseqgaiiFebDRAFT_10988777

Overview

Basic Information
Taxon OID	3300000363 Open in IMG/M
Scaffold ID	ICChiseqgaiiFebDRAFT_10988777 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	948
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)		Depth (m)	.1016
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042397	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
ICChiseqgaiiFebDRAFT_109887772	F042397	GGAGG	MKRSQVIAVVLALVATGCAHYDKQGHWVRTGPARFDAQSVSAPGIVYTLEEDGTWAGLDGDRYQRVGDDLRKVGAFAPTPSLIRPSGWVTIDRRPDGLMYLPSYPGGRIWTFVTEDGQPIPTDLEVPLYLAANLGLGGQWIDLFTPGSEQAGIPLKPDCAVVLFDLQGRQVAGFVSKQGAACSDPSYPGQQTLARLVKVRGEVWESPVRPAPP*

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