NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_100717240

Scaffold INPhiseqgaiiFebDRAFT_100717240


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_100717240 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1955
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005788Metagenome390Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1007172402F005788GGAMTPKEFQKSNLAVELKTGRKRLEGALQGLSDEQCERAGATRSGSVVHLLSEIVTREFLVLMEVSDRLPSSPMNLLANADGRTATASGAEKGAANRPVENFLAEFGVLRSAIIRRIEDRKPQGTEFDAKYAYVAEVCVTRFSEQIDEIERWRSCEIVGFSAARLRVEAREAELNQAIVELIQEDFLVGNFDLKSLFSLLFDRFYSEDFILWLGAEERNGRTAAFQRMADVLEPINTVLEMGLASIVSCRPTEREQDAEGNFITDWETILEGTYSTGIPARWRTXXXSLSKSRRVIAEXIEDLPSPESESLDHA*
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