NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_101480132

Scaffold INPhiseqgaiiFebDRAFT_101480132


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_101480132 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1862
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021499Metagenome / Metatranscriptome218Y
F055583Metagenome / Metatranscriptome138Y
F075940Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1014801322F055583AGGAGGMKNIFELEVEELEERIAPDVLGGGHPAQTANPEGTANPEHSAVPEGPNTAGKP*
INPhiseqgaiiFebDRAFT_1014801323F075940AGGAMKDQIEIKDLEVEELEERIAPSSTAAASASSNGISHGATPEVPVGAHPQPNP*
INPhiseqgaiiFebDRAFT_1014801324F021499GAGMKDQVEIQELEVEELEERIAPGGFGPSNNGNPGNEVSNGAKPHPAGSP*
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