NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold INPhiseqgaiiFebDRAFT_101792126

Scaffold INPhiseqgaiiFebDRAFT_101792126


Overview

Basic Information
Taxon OID3300000364 Open in IMG/M
Scaffold IDINPhiseqgaiiFebDRAFT_101792126 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)6515
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022780Metagenome / Metatranscriptome213Y
F048654Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
INPhiseqgaiiFebDRAFT_1017921263F022780GGAMTQMKIGDRVYIRGLVHSDCVGLKGTILDVRPSALFGPRIQRCKVDFNGKIRSLLNIHLLMPLVSPAEAR*
INPhiseqgaiiFebDRAFT_1017921266F048654N/AVHCLLIFLTVLQISYEPLAAPAVRGDRFQIFVPQGWRTLNDGGYVLLEHSSGASLLVQRXIKPNNLPDYAQRXAERIMLPLGFAXLGEPQSFKNGXDEWIQYEIRGNRLTAHRRILYRALRRDTGFFEVIYEAADDQFDLLLTEAEGIASSVQATIQAPPARRARR*
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