NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold WOR_119394

Scaffold WOR_119394


Overview

Basic Information
Taxon OID3300000393 Open in IMG/M
Scaffold IDWOR_119394 Open in IMG/M
Source Dataset NameGB background transcript assembly
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterPennsylvania State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)573
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua → unclassified Candidatus Scalindua → Candidatus Scalindua sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Hydrothermal Vent Microbial Communities From Guaymas And Carmen Basins, Gulf Of California

Source Dataset Sampling Location
Location NameGuaymas Basin, Gulf of California
CoordinatesLat. (o)27.506Long. (o)-111.347Alt. (m)Depth (m)1990
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049073Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
WOR_1193941F049073N/ALNRELIKRHEKILDKLDKDELPSQEDLQLVRDANEIHLNDEDNLNGRHKEAVELDKWLDTMMELTAKQAFEILEKHLHDDSHTPAVVFRALHTLWEEITPNDVVDGPGINDKGKCLKCGSKVSFADVTDTLVFVGDEIIKRHDGDITNRNCVRCTYPKQYPEYEGYDTR*
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