NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BB_Man_B_Liq_inBBDRAFT_1002310

Scaffold BB_Man_B_Liq_inBBDRAFT_1002310


Overview

Basic Information
Taxon OID3300000401 Open in IMG/M
Scaffold IDBB_Man_B_Liq_inBBDRAFT_1002310 Open in IMG/M
Source Dataset NameMarine microbial community from La Parguera, Puerto Rico - BB Mangrove B Liquid
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3647
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Bioluminescent Bay → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location NameBioluminescent Bay, La Paraguera, Puerto Rico
CoordinatesLat. (o)17.966667Long. (o)-67.0Alt. (m)Depth (m).39
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046386Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
BB_Man_B_Liq_inBBDRAFT_10023101F046386N/ALMYIVMMLRKIVLVLLCLPITIHAQIWDDGLAEKYIDTPGDYMMFSGELGYDGGTRQKGIFFFLYPSNKSSCSGNLEAEDVLKINNNPVEGILFEQTFPNSDNCYIQIVPKSPKDLDIIISQFIKSKEVLFNYRSFEISIPTDGFESKWNSMEKELP*
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