NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LV_Brine_h2_0102DRAFT_1003008

Scaffold LV_Brine_h2_0102DRAFT_1003008


Overview

Basic Information
Taxon OID3300000405 Open in IMG/M
Scaffold IDLV_Brine_h2_0102DRAFT_1003008 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - sample: Brine Hole Two 0.1-0.2 micron
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4234
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga haemolytica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008854Metagenome327Y
F027681Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
LV_Brine_h2_0102DRAFT_10030083F027681N/AMRNWIIITFFLYREFKIFGKTISRLRAATPTVIAFFFGVISQTIIGSEHWLVILIEWIPFIICIILGFYYYKYKPVKYDELIDWQQQFKYLSKPDQIGTKDETFPDGVYYTIEMKRLDKIHFNYFSEDNVDVIKGLAPTLVTIIGAIIYVLLQ*
LV_Brine_h2_0102DRAFT_10030084F008854N/AMEHLNTNELLKIIDEVRQEVCDRDLTALTYECHKGSRVSNNYEVNKNGSNIFKIEIKNQLK*
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