NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LCrCPGB2_illDRAFT_1003863

Scaffold LCrCPGB2_illDRAFT_1003863


Overview

Basic Information
Taxon OID3300000436 Open in IMG/M
Scaffold IDLCrCPGB2_illDRAFT_1003863 Open in IMG/M
Source Dataset NameSoil microbial communities from Colorado Plateau, Greene Butte sample - Light Crust, Colorado Plateau, Green Butte
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2833
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Source Dataset Sampling Location
Location NameMoab, Utah
CoordinatesLat. (o)38.714972Long. (o)-109.692944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006886Metagenome / Metatranscriptome362Y
F069716Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
LCrCPGB2_illDRAFT_10038635F006886GGCGGMYQDFDASEFDYLNTGNFAQTEDQKQQAKTPEISNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPALIPAAVILIPAASLGLALYSLSAEGAGKVRSPLILLAVGTALLSANWDAWLAWVIANSQLLIFSFAIIVITAGFVGTQIWSKLSNVK*
LCrCPGB2_illDRAFT_10038636F069716GGAGMLSNINQPIVAGLLSLSVVGFAGATALPFNDRIEYRIGNRIDSQPAWLVPPKAEFRAIERGYGGIKILLSLLATGGMVTVMLIARKEGEQEPIRQRIKQYKNKAYEFDFAAESAYSMAATQQRYKTLLQADGQAFEDEIETAYCQSLGIDPQQQQARLTGTTTLDSVANPGDKVDQQAAASAIEPETDRTTDPKMPVLTNYPSVLIYGAPGSGKTTFAEQE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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