Scaffold TBL_comb48_EPIDRAFT

Basic Information
Taxon OID	3300000439 Open in IMG/M
Scaffold ID	TBL_comb48_EPIDRAFT_1000157 Open in IMG/M
Source Dataset Name	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000439 Open in IMG/M

Scaffold ID

TBL_comb48_EPIDRAFT_1000157 Open in IMG/M

Source Dataset Name

Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	51902
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (20.48%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

51902

Total Scaffold Genes

83 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (20.48%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.0412

Long. (^o)

-89.6864

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Family

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_100015723	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMNTNVNITKNVHEEFARSNWIGGAGHKWVPVSNGQSLVSCVTPDDQMFIVQPFEGTNEGSYNMGYVYVKMPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDSRVLRQLWQYAKQSSGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRFNVDWTYNASLSTFNVNDPTTWPRLVRVLPYIPVTTELGCKYVQNTAYNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLSPNYAPQYTPDCYACNSTVSQPI*
TBL_comb48_EPIDRAFT_100015729	F048735	N/A	MEYNGLVLDAPKDTTYGIPYLETVPQFVRELSCYALTRGEFGRRERIKRGIRIEDTDLKNPAQHMVNCFNLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVMDWISAPTVTSTYVASTSLDASEDRLWGKVCTLYRVAMRNIQAQYKTATIGNLVEYRRMIVFESIDTRDTERDYTNAIKALAFPKGGEGKRAVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWDAVNRYTKKWRTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTVEGEAATLKRCYGNKNALEYWRNVYGWWPDNSVELTIFSKAFIAGCDLNFEPVWSGRTRVVCGFDPAFTAGGDRCAASFCRLGQNDTGRNVGFYLGTREYESSVGDVFEESIAMQLVKDCIEFGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMGMPTDRRISNLDKRTCKEAYDRLVTEYWFAVHTAFSTRSLVGIDVDAHSKVVNELCSRLYYHKGRKVAVEKKLDMKHRLKKSPDLADSLTYAVQMLRRAGLEFAFEEETVSLDIQEISDWENRLIHSKATSQEQIEDDEWGYGGKGTDDDGF*
TBL_comb48_EPIDRAFT_10001574	F038058	AGAAG	MAGEQYTYDNTERGIVSDHATPQPMQRVQIKGDIPTIRAYKDARTARIKSIGESNQRAFSVGGPANETAMGKGTPFNADWL*
TBL_comb48_EPIDRAFT_100015781	F039455	N/A	VATYLNLGRYGDICAFLPVLKNEFDETGTKPSLIVSKDYADILDGVSYVEKIVYDGPFEDVMGALEKFKEDNVITTQVVGITDVIVSQVYGNHVGPQIICDSFQMDAWRLCNKLDLWPKQPKLVFDKRDSKREKKLVKGLPKDKPWIVVSTGGTSSPFQYQELLWEILNNSLPEFHIVDLGKIKAEKFYDLLGIMDHPNTHAMILTDSGPLHLAYATEKPVHAIVTDRPSLWHGTAWRPFYASYTRYRHFPRDVVGILEKIRRKDKPTILYPEIVHVYQKMPWATGDEKRRNDLAAKTWQAIPCVDLGLDDNCFVRSSAEVIPGETRRIPMIKDMLRLACVGRNDEAVLLLTNTDTCIANNLIQRLEGTLPAYSYRRDFKRIDEPLPYDRISAGAKYAGCDFFAMRVGWWRRNHHLFPDMVLGRHSWDLIMRELMKIANGREIEDLIYHEWHPSLWEGEGLQRDPSNLRNCKLAREWLQERKMPLLELEDLNYEGKFKRPDFSKLKT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold TBL_comb48_EPIDRAFT_1000157

Overview

Ecosystem & Geography

Associated Families

Sequences