Scaffold TBL_comb48_EPIDRAFT_1003969

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold TBL_comb48_EPIDRAFT_1003969

Scaffold TBL_comb48_EPIDRAFT_1003969

Overview

Basic Information
Taxon OID	3300000439 Open in IMG/M
Scaffold ID	TBL_comb48_EPIDRAFT_1003969 Open in IMG/M
Source Dataset Name	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9649
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.0412	Long. (^o)	-89.6864	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005200	Metagenome	408	Y

Sequences

Protein ID	Family	RBS	Sequence
TBL_comb48_EPIDRAFT_10039696	F005200	AGG	MIEVLAVISACKAAHAGIRECVDLYQDFKKDGKDVSDILNEVGTHLGAFFTHQEAFKEAEKEAKKNPLPKNISINEEAMNRIIRQQQIEQMETDLREMIIYQLGMPGMWSKFTEMREIVKEREKIEREQKKLWKWLLSKGDSSLTNGRLESHCQQVYSYCLQPLLFLCTESI*

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