Scaffold F12B_10150774

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold F12B_10150774

Scaffold F12B_10150774

Overview

Basic Information
Taxon OID	3300000443 Open in IMG/M
Scaffold ID	F12B_10150774 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2976
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028354	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
F12B_101507742	F028354	GGAGG	MKRLELTQHTVRCPRADRTADLTVRTDPGAYPSRRHRDVTACSLMPSTSFALPPRKAYFSDLTPLVPYVCEIYPAQRHSPEVACPRPCLAVLNAAESGAAEPVRCVSGVSDSLELAQRTQSPAIKQLLWFFGV*

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