NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F12B_10866481

Scaffold F12B_10866481


Overview

Basic Information
Taxon OID3300000443 Open in IMG/M
Scaffold IDF12B_10866481 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)962
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008208Metagenome / Metatranscriptome337N

Sequences

Protein IDFamilyRBSSequence
F12B_108664812F008208GGAGGMSSGIFRFLGASVATMLFVGFALAPTPAPAQGLQCASNPLIGTWRLNLQKSTITRNNGVIEPRIMIIAPFGDNGITEVFLNDRDPRLVGRWEMWSVQFDGKPYPTKGGDPRQMRWTRIDCNTFQHETLRQLYYNLPDGTVKEYVPEGRVSSGGRITVSADGKTLTNKHTGTLGNQTRYEDEILVFDRQ*
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