Basic Information | |
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Taxon OID | 3300000443 Open in IMG/M |
Scaffold ID | F12B_11037714 Open in IMG/M |
Source Dataset Name | Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1475 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu |
Source Dataset Sampling Location | ||||||||
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Location Name | Kanza Prairie, Kansas, USA | |||||||
Coordinates | Lat. (o) | 39.100992 | Long. (o) | -96.608258 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005925 | Metagenome / Metatranscriptome | 386 | Y |
F035439 | Metagenome | 172 | Y |
Protein ID | Family | RBS | Sequence |
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F12B_110377141 | F035439 | GGA | VLPDHFHPILGSAVDTWATVFVAVGTVGAVAYALFRDLVVVPRRRPKLDLRFGRTGNDQVVVGTAGGFDAAYIRLRVANGXGKDAADDVVVMVTEVRRLKDSENPLTEARPIMLPLAWSGSSPPLTVGPVHPGSERHVDLVHVDWPARGEIDIARKWRDNAPARLALTPKPAGGQETLDPGTYEISVEVRARNAVAIGYAIPLSWDGKWSGKAEMWDHLRVEPPRKAQ* |
F12B_110377142 | F005925 | GGA | VSGPGPWEIGANLGRHERPDVDSRGWLWTLNTRRPGVEVVIEISGTAWSSDPLRLPEDTRQALETDGRAELLKVLDQDNPPRVIRCGSSGCSCLYVDEVGKRAVPNVNT* |
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