NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ZC3D78_113584

Scaffold ZC3D78_113584


Overview

Basic Information
Taxon OID3300000476 Open in IMG/M
Scaffold IDZC3D78_113584 Open in IMG/M
Source Dataset NameZC3D78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Sao Paulo
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location
Location NameSao Paulo Zoo Park
CoordinatesLat. (o)-23.651079Long. (o)-46.620668Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078430Metagenome116N

Sequences

Protein IDFamilyRBSSequence
ZC3D78_1135841F078430N/AGVVLPRVYVQESEPDWVGKLIRRWTLRTRPLEWSEYQAIEQMVREVGVARSIERAVDGTPHVLGASQVGFVLDEGGGQTTETAVYITAYRVVRPLSLPQRREIELQLEEA*
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