Scaffold AAW_1008079

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AAW_1008079

Scaffold AAW_1008079

Overview

Basic Information
Taxon OID	3300000494 Open in IMG/M
Scaffold ID	AAW_1008079 Open in IMG/M
Source Dataset Name	Anaerobic digester microbial communities from Northern Denmark, sample from West Aalborg sludge
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aalborg University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1482
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp.	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Anaerobic) → Activated Sludge → Anaerobic Digester → Anaerobic Digester Microbial Communities From Soeholt, Denmark

Source Dataset Sampling Location
Location Name	Soeholt, Denmark
Coordinates	Lat. (^o)	57.045078	Long. (^o)	10.047414	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054825	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
AAW_10080792	F054825	AGGAG	MSTHPTDRNLDLWLIDKDAEGVLKPGPGVVYDRAGLGIVFMDDRGRDFTFIDTGVALEVFAGQGARLTPALARDLAAALERFADYADGLTAYVPTSAAAT*

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