Scaffold LJQas_1028946

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold LJQas_1028946

Scaffold LJQas_1028946

Overview

Basic Information
Taxon OID	3300000549 Open in IMG/M
Scaffold ID	LJQas_1028946 Open in IMG/M
Source Dataset Name	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI), Lifesequencing S.L.
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	647
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Source Dataset Sampling Location
Location Name	Sierra Nevada National Park, Granada, Spain
Coordinates	Lat. (^o)	36.95744	Long. (^o)	-3.46336	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056041	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
LJQas_10289461	F056041	GGAGG	MAVKGEEVASSIDAQVRESIEKMVAEIRSSVEDVRVAVDQQLKAALQSVQADVNSITFLPQIRKSIAELEEELEADRPEPVALAAAAPAVSGAARVKNAVRIIERGRSQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.