NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold TBL_comb47_HYPODRAFT_10094449

Scaffold TBL_comb47_HYPODRAFT_10094449


Overview

Basic Information
Taxon OID3300000553 Open in IMG/M
Scaffold IDTBL_comb47_HYPODRAFT_10094449 Open in IMG/M
Source Dataset NameTrout Bog Lake May 28 2007 Hypolimnion (Trout Bog Lake Combined Assembly 47 Hypolimnion Samples, Aug 2012 Assem)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012215Metagenome / Metatranscriptome282Y
F032933Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
TBL_comb47_HYPODRAFT_100944491F032933N/AMSSGSTVPDPDPELINAQNFDFAKPKLFFKNIGKYAATSTYIHVRIPFNFTTVXNTKQAIAGVYDQLLAQHDEPFKSITKSVTXVSLSIIXGSLEEFRDIIKALPQKTEISTPGRPKRFIAIGISIAAMAMSTFNTVRITQLNEEISTLKEKTDLILDVVHLHEKHLHHIEEKLEQTNKLLADLLEANVWFTSKVTDAIEKKFESVIWHHENVVKSAQHHRLAPGALPHDVLDGIIEHVTAV
TBL_comb47_HYPODRAFT_100944492F012215GGAGVSVDEYPDGGVEAVAVLEVYLALEAVPEVDGLGEEGVVLGLEEVLEEVVDDGNRALVEVLALGGLTLTTAG*
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