NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_10004987

Scaffold Draft_10004987


Overview

Basic Information
Taxon OID3300000558 Open in IMG/M
Scaffold IDDraft_10004987 Open in IMG/M
Source Dataset NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14743
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameSyncrude, Ft. McMurray, Alberta
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075043Metagenome / Metatranscriptome119Y
F092306Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Draft_1000498719F075043AGGAGMRKILYAMQEIRKAQLAEQNVPTERLREVEDKFHYLDQGLNGIGKSAHPDERLAETMTSGDFTYAIQEFVQRKMYSSYQRQSFAFEPLVKTDTLPNYLPVTRYLDQAGVDDLEYVGEKAQARPGFMDDLTKRQWQVYRWEKQYDFSHEALVNDDLGYFDEITGKMGEAARRTLEKFVSRMYTNATTIARLVGLGALYSTTGRLTTARISEARMAFNQRTDSRGERIQSPLTHIVYHTGLADTVAQIQASMLVPELATNAANVIKGTFTAIEDPYIVGTAPNLPWYAFASGIKTFVLARRSGMAGPMILRKKSDIETATSLLGGGGAVDNIWGDFQSGNIVLKVVDVWGTYIDGTEGNLVDYRGAYYSTGTAP*
Draft_1000498720F092306N/AMTMPATFQEGPGWEQSSEPILIVDVQESDIWPVDDRSGSGTKDQIDEGLHPIVAIGGRTAADGRPLNLTGVVVSCNISVLGTATDRVMVNIADGAIVRQYVSNILTYADGSAATFEQAPVVGQPVYVDDSDDLSAGVTVSMSPLNDAGVANPLAGYLWYCQDEIADGQVGGSRATSTFDTSLANEKVEQEFCVLLINAARELAQ*
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