Basic Information | |
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Taxon OID | 3300000558 Open in IMG/M |
Scaffold ID | Draft_10016911 Open in IMG/M |
Source Dataset Name | Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | McGill University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15714 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Syncrude, Ft. McMurray, Alberta | |||||||
Coordinates | Lat. (o) | 57.02 | Long. (o) | -111.55 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002260 | Metagenome / Metatranscriptome | 577 | Y |
F011761 | Metagenome / Metatranscriptome | 287 | Y |
F058146 | Metagenome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Draft_100169111 | F011761 | N/A | MAYVLGGANNEADGFTTAISNFALRAMHESQGLVNMTNVVTPTQGNTFLVPNFAPITYADYNPAGSGGTWGTGDAVVQNPALAQGSITATPAVATTAFDIFYGWTASFQLAATLGAELGDSFAEKVDQRVTAAFLAFKATPGNTMYSSTPADGFARPLELGAMELLPDGAVASAPTVGFTANNVLELVRLVKQQFKVARMPGNPVIVLDSNGFVSAASAGTQSGSSLTRMLGELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCQVMFTTFLQSASRNVDGVSGTPVLVGAYIGDSAIFTVLKEGLSIKTGEVPGGLQMWLTGVGYFGSGVGDKRRGGAINIVQD* |
Draft_100169112 | F002260 | GGA | MSRRKTVSVPYQRISNATVQDIMFYDPAAERRAEALDVDWDRYFKVASQEWLYKMEFGWWQNYCDTVVGATYYNNLPNGSLISAFNPNLLIKNDQTLIRLDVFGAILVFYESLVTDVSNMNEVDVKNYEFAKERCDREWTKAQELSNWYDLYQDSPNGPTSKLEENYLADVNYFNGDRRYF* |
Draft_100169116 | F058146 | AGGA | MKLSSLSAKPQLVEVKIDDKATVKEFGEPITFHTWDRQPMDVFMKLANSNNDTQSIIGVVKTLILDEEGKQILQDDAMLPTHVLMKAITKVTELLGK* |
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