NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F14TC_101941189

Scaffold F14TC_101941189


Overview

Basic Information
Taxon OID3300000559 Open in IMG/M
Scaffold IDF14TC_101941189 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068585Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
F14TC_1019411891F068585N/AMNLRVKKWAHLLVVTVCFIASHVTAQSGAHFSSQDFTTKSVFELLVNDSSVLKAGVSRMVTQSVFITLAHGLIPGNSAGLEIQFFTKPITEATITDILKNGAKESPKSDYAALVLFLDKNNKVWQANLSYVIPGTTVARTVAWKPEEVKKYFSNYQFDGKRLILKSKGSYSEQQSGKEKMRLSWNVDFNLPVFHPVK*
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