NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold F21B_13081654

Scaffold F21B_13081654


Overview

Basic Information
Taxon OID3300000561 Open in IMG/M
Scaffold IDF21B_13081654 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076261Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
F21B_130816542F076261AGGGGGLAHMIGSVTFQLGNATSSSQIVSSALSYFDPFFTAIMFFLGVAFWASLLFLIYYGIEAFAHPTPFGRSSRLASMYDHVKSIIWSIIAIYLVVAVIAFAVNQASAAAGAGTTVNAGQLFYYVFVEPIVNGFKLFFGVTK*
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