Scaffold SL_3KL_010_SEDDRAFT_10117616

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SL_3KL_010_SEDDRAFT_10117616

Scaffold SL_3KL_010_SEDDRAFT_10117616

Overview

Basic Information
Taxon OID	3300000563 Open in IMG/M
Scaffold ID	SL_3KL_010_SEDDRAFT_10117616 Open in IMG/M
Source Dataset Name	Alkaline sediment microbial communities from Cock Soda Lake, Kulunda Steppe, Russia - 3KL_010_SED
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1414
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Source Dataset Sampling Location
Location Name	Russia: Kulunda Steppe, Cock Lake
Coordinates	Lat. (^o)	52.06	Long. (^o)	79.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007038	Metagenome / Metatranscriptome	359	Y

Sequences

Protein ID	Family	RBS	Sequence
SL_3KL_010_SEDDRAFT_101176161	F007038	N/A	MWIGLADEGGRSWYGISSEADIDPSTNDFIAGVFRLITPDEPRLTHQELAAAIIAFCGDVDEFRAWVPSMESFAEWFGLGEEAEALYATSRDVDLRMVRSLVRPWPNGWPDHVLDLNAAAVEAGVEVPPRAVNHLHPRVHAEWNRELFARIGASRDG*

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