Scaffold RepKanNP_BrdU_F12BDRAFT_1014973

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold RepKanNP_BrdU_F12BDRAFT_1014973

Scaffold RepKanNP_BrdU_F12BDRAFT_1014973

Overview

Basic Information
Taxon OID	3300000564 Open in IMG/M
Scaffold ID	RepKanNP_BrdU_F12BDRAFT_1014973 Open in IMG/M
Source Dataset Name	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	544
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location Name	Kanza Prairie, Kansas, USA
Coordinates	Lat. (^o)	39.100992	Long. (^o)	-96.608258	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041104	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
RepKanNP_BrdU_F12BDRAFT_10149731	F041104	AGG	MEKATESLLRELEASPTDLKKLVVSAVWRHCNAIAIESEAISRWERDDPEHWASVQEWLLARGITITVLRSRPATEIPRAAPSLPGQPPAGAQG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.