NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12270J11330_10000158

Scaffold JGI12270J11330_10000158


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10000158 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50599
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (82.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017104Metagenome / Metatranscriptome242Y
F034385Metagenome175Y
F066943Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_1000015822F034385AGGAGMCEIGKPLEILDVEPLVLPAPLRKEDQPEQEPVTVPVEVPVAETETIVESSLDQKL*
JGI12270J11330_1000015853F017104GAGGMNRYREIKKATADVADIRIVRRPNTVEAHAAIRDVILANPTLSYKQIAGLLGCSRWLVYRVAVEFGVRRPRGAGSPSRRKEKQ*
JGI12270J11330_1000015854F066943AGGAGMKRSKYFDWEQAFHFIWQSADEDGIWHGDAASLAEEFEVSEESADEVLRELRTRRLVERLSARTYFLPNWKERDSIGLQEF*
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