Basic Information | |
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Taxon OID | 3300000567 Open in IMG/M |
Scaffold ID | JGI12270J11330_10000320 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37330 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (90.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany: Weissenstadt | |||||||
Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000410 | Metagenome / Metatranscriptome | 1170 | Y |
F012246 | Metagenome / Metatranscriptome | 282 | Y |
F054324 | Metagenome / Metatranscriptome | 140 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI12270J11330_1000032014 | F012246 | AGGAG | MKSSSNPILSSIAKSRTVLAIVLSISLLATGCSAQWISIALADLPVLTQMALNLGTIINTLQTGKQIGSADAVAIQNMSAQASKDLNLLEALYSEYKANPSASALQKIQSVIADINQSLPVLLQAAHIGDPVLSARVAAGVNLILTTVASFAALIPQTSSQLTAQKVAHPKLAIPKASDLKKQWNQQVCGPTSNSALDFSAAGCTAR* |
JGI12270J11330_1000032037 | F000410 | AGGCGG | MNRKLIWIEQKRFRGFGCSECAWVFNASGAPAGKTFDEMMQNFELRRDQEFTLHVCADYPKAKSTKEQEQR* |
JGI12270J11330_1000032038 | F054324 | GGAGG | MCPVHWDHVDHARSTRCVKQDWERLYRAAILESDRSRLPQRIEDAEAEILKRWRSLSRPRGHNGKEQEAITRALHILSLLREARQEQ* |
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