NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12270J11330_10008781

Scaffold JGI12270J11330_10008781


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10008781 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6872
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F001010Metagenome / Metatranscriptome807Y
F002004Metagenome / Metatranscriptome605Y
F004291Metagenome / Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_1000878111F000092GAGVKQSLGRQSGVQKVEVSLLDGKVDVTPKEDGQIDPAQLLKATYDSGVSVAELDMIARGKIVKDSSGNVAIQVAPNRSFGLAPNELSKGLEPLVDSATLVTVRGQLYKKPTGKKKADASAPLRLLILEVQKKE*
JGI12270J11330_1000878112F004291AGGAGGMNRKRVALLVLLGSMVVVPVAQAKIKHIEMRVEGMT*
JGI12270J11330_100087816F002004GAGMKKIPNSSRRLREHILRALNQIRKPSTADEITELLNRDLDLEDRPFQAKDVAEWLRNTKDTALTLYWSGTRPRK*
JGI12270J11330_100087817F001010N/AMAVTIEMQNTGDSRARREILAGVEHVMSDVAGEWLVSIVGSRANDNWEMKVEGPQGFERSYTLVGDAGEHQPDVIRNVLIKVLPASTR*
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Biomedical Sciences Research Center "Alexander Fleming"
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