NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12270J11330_10009435

Scaffold JGI12270J11330_10009435


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10009435 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6579
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F003859Metagenome464Y
F005112Metagenome / Metatranscriptome411Y
F016632Metagenome / Metatranscriptome245Y
F025427Metagenome / Metatranscriptome201Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y
F039911Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_1000943511F028392AGGAGMPNTIAVVHLPEALRNGSSALVKLAGKIDSFSLVLWRTPESQLKRQIEEDYHAMVFTTRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEVGDLGTPPQPKRGKLCQQCCFFLGEPEGEVSEITVSKTPEHLVRGSMHGTSGPISTVNRNRSCPSTLPQPLSQ*
JGI12270J11330_100094353F005112AGGAGMSLVAKYKLFWAACIATLCGLAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMILYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLVTGQVVARMDRRNRKEAARAA*
JGI12270J11330_100094354F039911AGGAGMKYTIAALLAVVVAIAGYFGIRHLTRKDLGFTPAKRYASKLASTLIHTEATAAQEAGVSPAA*
JGI12270J11330_100094355F002761AGGAGGMTFTPSSTSSFAAGAVFWSMVWAGLGKLNELARFVGFKRARPRESALRWINSHKVIALTTTEVVNYSVHGVSSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRLS*
JGI12270J11330_100094356F025427AGGAGMRPGEMEELLASLKTCPVQKKGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCVTAWALNWEHEMTAYMDETFKKWKEEHDLHSE*
JGI12270J11330_100094357F027079AGGAGVIKSFLNLCLLLFLDMLAYMVAIAAAAAVAWAAVCGARWIFAALRNSVMSLRRRWRKKEMCAHATR*
JGI12270J11330_100094358F016632AGGAGGLTGILEVFALAEIGSGIGFLASWRNKVLKAKVNFFRQPNNKSSPFDKVLRAKVGRAFTRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRQALRKKGERPW*
JGI12270J11330_100094359F003859GGAGMNEWNAERSTGLEMTNVASSWPGASLYKSLKHGWQWRRLKWAVAAASEATQGHEANGVRPGAQEFKTLYDEVATRVQQYSGEASVPIDTLKAKLPALCAIERLANPETSVPQNRLGLTLGVVIASVLGSIGIGVLIGLGTGMAHWIARLFA*
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