NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI12270J11330_10015276

Scaffold JGI12270J11330_10015276


Overview

Basic Information
Taxon OID3300000567 Open in IMG/M
Scaffold IDJGI12270J11330_10015276 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4930
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028256Metagenome / Metatranscriptome192Y
F032361Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
JGI12270J11330_100152762F032361GAGGLVGLFPLFLLDAPPAEARLNLPQSKQVVTLPGNLVGSIRANLEPSPSGPVAFAAPIQADLLGALPQDFRAACPSLIESWGDIARGTDEWRVRVLVRQADQVWLAFRCASRAREYEKDYDERPALLRLATGKLEFFPLASDAENDSTLYHVEFSELLPLEGAQGVVLKVTEPAGNPCCDGPESRSGETWRVFADLPHGVAELLSVTTVRDDSSHCDDPEVDSETTYRAQITLNRDVQNRDKEVAATFREEVKEITYEGEKANPHTVRQRSGTLCYRWIPASLRFEEIK*
JGI12270J11330_100152764F028256GGAMLLAMLLWLSLLNPPKADHLVNSLAGSRHEYKVVLGAALLSMVFSFIAAMRGSKWWYIGVALSSGTLAFLTYSLAA*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.