Scaffold JGI12270J11330_10031281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12270J11330_10031281

Scaffold JGI12270J11330_10031281

Overview

Basic Information
Taxon OID	3300000567 Open in IMG/M
Scaffold ID	JGI12270J11330_10031281 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - SII-2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3107
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065333	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100312813	F065333	GGAGG	MKTKFIIPVTCLMVLALCGCVSTLIGEKVASTATPPHIANFNFDLSTPGADAGRLTVQFRQPTYQLSVEKYAVKIDSLPPLVVSKQSDVEVKLDAGKHSLKFYAVSSNPEESEKVSFGEPTKREIVIIEDQEQKLKYTGPYRLFGQGDVEVIQ*

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