NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1358J11329_10002676

Scaffold JGI1358J11329_10002676


Overview

Basic Information
Taxon OID3300000571 Open in IMG/M
Scaffold IDJGI1358J11329_10002676 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13631
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036068Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
JGI1358J11329_100026768F036068AGGAGMRKFLVVAFALLVSGSVALAQNKIDTKWHCPKPPTAQKFDVGDVADHVYEIDQGTCSATSSDPGFPEKTGSFTEFHEAWKASINLHGRFNATMDNGDKIYYTYAASVSTDISKPAANKWKIVGGTGKYKGIRGSGTCSGKYNADGSGDWSCTGTYTMGK*
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