NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1357J11328_10002959

Scaffold JGI1357J11328_10002959


Overview

Basic Information
Taxon OID3300000574 Open in IMG/M
Scaffold IDJGI1357J11328_10002959 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11972
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072875Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
JGI1357J11328_100029595F072875N/AMRSPQPYLTVASILSGFGISVFMFRIQRELGVRDKHPDWPNWLAWADYLVFATIILSLSLVVLPLIASPEPSDFAFSVAAGACAATSLLMLAYPFAILDHYRIEIGVWRSKENSGANVRHRGEPIEKAIVVITGLVAVVVFVWVMLAWE*
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