NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI1357J11328_10010429

Scaffold JGI1357J11328_10010429


Overview

Basic Information
Taxon OID3300000574 Open in IMG/M
Scaffold IDJGI1357J11328_10010429 Open in IMG/M
Source Dataset NameSubsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5310
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Source Dataset Sampling Location
Location NameS. Glens Falls, New York, USA
CoordinatesLat. (o)43.292222Long. (o)-73.604444Alt. (m)Depth (m)5.4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024750Metagenome / Metatranscriptome204Y
F067563Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
JGI1357J11328_100104292F024750GGAGGMKLSRNELEFLAAWAREEWEPACYQLPAHRLQLAHGVPGATMIVLIKAWSKAERKKDQEILHVSLNREPNWPWSTMEELRARLEEASTERAHQETPAA*
JGI1357J11328_100104293F067563N/AVADRYTGLYERVSAADVPPGGNVAMAPWPYQPCPHPSCRQPITDLLAEMLPNADRTSPEFKSVVGQMPGGAITCPYCQEAVEYGTDGATLAVSAKTPLRYSRAKMEMRATDYGSQKSPPDPGMTPEQWIAEEKLMPGALQGYKYVEDLTP*
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