NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1012936

Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1012936


Overview

Basic Information
Taxon OID3300000596 Open in IMG/M
Scaffold IDKanNP_Total_noBrdU_T14TCDRAFT_1012936 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_1_20CM_4_54_11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060206Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
KanNP_Total_noBrdU_T14TCDRAFT_10129361F060206GGAMRRKITHETWGQIKTAYAAGVNLREIARKMNIPEGTVLAHAKRHGWTQQIQVATGQLTVMQSDAIRPVQSVPQSLAAILAERKVRTRLGLSKFTAEAAEQAAERRDKLGIARNVRDVAAVHSTLWPTEPEPGILQIGALTGEVKVERNVRGRELPAE*
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