NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1022309

Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1022309


Overview

Basic Information
Taxon OID3300000596 Open in IMG/M
Scaffold IDKanNP_Total_noBrdU_T14TCDRAFT_1022309 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)689
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061747Metagenome / Metatranscriptome131Y
F062543Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
KanNP_Total_noBrdU_T14TCDRAFT_10223092F061747GGAMKTAKIENANAELKVWCESCCIRVAPNEERTVVRGKTYHLHCYSKLITKPKTDVEGVST*
KanNP_Total_noBrdU_T14TCDRAFT_10223093F062543AGGMRWYLGVRCQKCRMPILFALDQSEGTKEGQPLSTGKLVLTCPVDECRHQADYTAATVSRFQKMAGKPKETGRNNENSENRKRKR*

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