NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1042509

Scaffold KanNP_Total_noBrdU_T14TCDRAFT_1042509


Overview

Basic Information
Taxon OID3300000596 Open in IMG/M
Scaffold IDKanNP_Total_noBrdU_T14TCDRAFT_1042509 Open in IMG/M
Source Dataset NameAmended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)515
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Source Dataset Sampling Location
Location NameKanza Prairie, Kansas, USA
CoordinatesLat. (o)39.100992Long. (o)-96.608258Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002066Metagenome / Metatranscriptome597Y

Sequences

Protein IDFamilyRBSSequence
KanNP_Total_noBrdU_T14TCDRAFT_10425091F002066N/AVRLHGGLSIGATYPLSFVDIDGNKHSTADGRVTVVVLTTSADREKARTVGDRVPEHCLGNPDYRMITVIRFARKHTVVGRRIVTAFIRHRVNEEAKRLQARYDVKKIVRDARTDIFVATDFDGSMSSQLGEPEGVTDFCVFVFGRNGELIAQWHGVPSAEXLAAALK*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.